#!/bin/bash      

# Install tool according to https://github.com/ISI-MIP/isimip-qc

# Schema definitions:
ROUND='ISIMIP3b'
DATATYPE='OutputData'
SECTOR='water_global'

# Define working directories:
UNCHECKED_DIR=/YOUR-PATH/TO/UNCHECKED-FILES
CHECKED_DIR=/YOUR-PATH/TO/CHECKED-FILES # needed in case of copying or moving files after successfull checks
LOG_DIR=/YOUR-PATH/TO/LOG-FILES
echo $UNCHECKED_DIR
echo $CHECKED_DIR
echo $LOG_DIR

# Uncomment to only show the working directories:                                                                                                                            
#exit                                                                                                                                                                                          

# Create working directories if needed:
[ ! -d $CHECKED_DIR ] && mkdir -p $CHECKED_DIR
[ ! -d $LOG_DIR ] && mkdir -p $LOG_DIR

# Additional definitions for options
# When using your own local build of the ISIMIP simulation protocol. By default the tool
# relies on the official online protocol at protocol.isimip.org
PROTOCOL_LOC=/YOUR-PATH/qc-env/isimip-protocol-3

# Command line:
isimip-qc $ROUND/$DATATYPE/$SECTOR/  \
    --log-level=INFO \
    --log-path=$LOG_DIR \
    --unchecked-path=$UNCHECKED_DIR \
    --checked-path=$CHECKED_DIR

# Other useful options:
     
# --protocol-location=$PROTOCOL_LOC # see above
# --fix # fix warnings after finishing the tests. Mainly concerns meta data available from the protocol
# --fix-datamodel # rewriting to requested data model (compressed NetCDF4 classic). Uses cdo or nccopy which need to be available on your machine
# --move # --copy # Move or copy files to $CHECKED_DIR
# --minmax or -r # check if values are in a valid range defined in the protocol.